Byung-Jun Yoon
California Institue of Technology
Department of Electrical Engineering
Digital Signal Processing Group
PUBLICATIONS | THESIS
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Signal Processing Methods for Genomic Sequence Analysis
Byung-Jun Yoon, Ph.D. Thesis, California Institute of Technology, Electrical Engineering, 2007. (Defended Nov. 2006)
PUBLICATIONS | JOURNAL
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Structural alignment of RNAs using profile-csHMMs and its application to RNA homology search: Overview and new results
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
IEEE Transactions on Circuits and Systems: Part-I, IEEE Transactions on Automatic Control, Joint Special Issue on Systems Biology, to appear in Jan. 2008.
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Computational identification and analysis of noncoding RNAs - Unearthing the buried treasures in the genome
[Paper]
[IEEExplore]
Byung-Jun Yoon and P. P. Vaidyanathan,
IEEE Signal Processing Magazine, Special Issue on Signal Processing Methods in Genomics and Proteomics, vol. 24, no. 1, pp. 64-74, Jan. 2007.
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Context-sensitive hidden Markov models for modeling long-range dependencies in symbol sequences
[Paper]
[IEEE Xplore]
Byung-Jun Yoon and P. P. Vaidyanathan,
IEEE Transactions on Signal Processing, vol. 54, pp. 4169-4184, Nov. 2006.
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A practical approach for the design of nonuniform lapped transforms
[Paper]
[IEEE Xplore]
Byung-Jun Yoon and Henrique S. Malvar,
IEEE Signal Processing Letters, vol. 13, pp. 469-452, Aug. 2006.
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A multirate DSP model for estimation of discrete probability density functions
[Paper]
[IEEE Xplore]
Byung-Jun Yoon and P. P. Vaidyanathan,
IEEE Transactions on Signal Processing, vol. 53, pp. 252-264, Jan. 2005.
- The role of signal-processing concepts in genomics and proteomics
[Paper]
P. P. Vaidyanathan and Byung-Jun Yoon,
Journal of the Franklin Institute (invited paper), Special Issue on Genomics, vol. 341, pp. 111-135, 2004.
PUBLICATIONS | CONFERENCE
- Fast Structural Similarity Search of Noncoding RNAs Based on Matched Filtering of Stem Patterns
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. 41st Asilomar Conference on Signals, Systems, and Computers, Monterey, CA, Nov. 2007.
- Minimizing the computational complexity for finding RNA structural alignments based on profile-csHMMs
[Abstract]
Byung-Jun Yoon and P. P. Vaidyanathan,
IEEE Statistical Signal Processing Workshop (SSP), Madison, WI, Aug. 2007.
- Fast search of sequences with complex symbol correlations using profile context-sensitive HMMs and pre-screening filters
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. 32nd IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Honolulu, Hawaii, April 2007.
- Robust adaptive beamforming algorithm using instantaneous direction of arrival with enhanced noise suppression capability
[Paper]
Byung-Jun Yoon, Ivan Tashev, and Alex Acero,
Proc. 32nd IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Honolulu, Hawaii, April 2007.
- Modeling and identification of alternative folding in regulatory RNAs using context-sensitive HMMs
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), College Station, Texas, May 2006.
- Profile context-sensitive HMMs for probabilistic modeling of sequences with complex correlations
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. 31st IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Toulouse, May 2006.
- An overview of the role of context-sensitive HMMs in the prediction of ncRNA genes
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
IEEE Workshop on Statistical Signal Processing (SSP), Bordeaux, France, July 2005.
- Scoring algorithm for context-sensitive HMMs with application to RNA secondary structure analysis
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), Newport, RI, May 2005.
- Optimal alignment algorithm for context-sensitive hidden Markov models
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. 30th IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Philadelphia, Mar. 2005
- RNA secondary structure prediction using context-sensitive hidden Markov models
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. International Workshop on Biomedical Circuits and Systems (BioCAS), Singapore, Dec. 2004
- HMM with auxiliary memory: a new tool for modeling RNA secondary structures
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. 38th Asilomar Conference on Signals, Systems, and Computers, Monterey, CA, Nov. 2004
- Identification of CpG islands using a bank of IIR lowpass filters
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. 11th Digital Signal Processing Workshop, Taos Ski Valley, New Mexico, Aug. 2004
- Wavelet-based denoising by customized thresholding
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. 29th IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Montreal, May 2004
- Discrete PDF estimation in the presence of noise
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. International Symposium on Circuits and Systems (ISCAS), Vancouver, May 2004
- Improved estimation of discrete probability density functions using multirate models
[Paper]
Byung-Jun Yoon and P. P. Vaidyanathan,
Proc. 37th Asilomar Conference on Signals, Systems, and Computers, Monterey, CA, Nov. 2003
- Discrete probability density estimation using multirate DSP models
[Paper]
P. P. Vaidyanathan and Byung-Jun Yoon,
Proc. 28th IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Hong Kong, Apr. 2003
- Digital filters for gene prediction applications
[Paper]
P. P. Vaidyanathan and Byung-Jun Yoon,
Proc. 36th Asilomar Conference on Signals, Systems, and Computers, Monterey, CA, Nov. 2002.
- Gene and exon prediction using allpass-based filters
[Paper]
P. P. Vaidyanathan and Byung-Jun Yoon,
IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), Raleigh, NC, Oct. 2002.
PUBLICATIONS | TECHNICAL REPORT
- The design of nonuniform lapped transforms
[Report]
Byung-Jun Yoon and Henrique S. Malvar,
Microsoft Research Technical Report TR-2005-116, Sep. 2005.
- Non-parametric estimation of discrete probability density functions using multirate DSP models
Byung-Jun Yoon and P. P. Vaidyanathan,
Internal Report, Dept. of Electrical Engineering, California Institute of Technology, May 2003
LINKS
since Oct.09.2002 - by Byung-Jun Yoon
- last update: Nov.12.2007 -